Antibiotic susceptibility of bacterial agents in children with SAM: A single-centre cross-sectional study

Singh JK 1, Bajaj N 2, Pattnaik D 3, Singh J 4 

1Dr Jeetendra Kumar Singh, Senior Resident, Department of  Pediatrics, 2Dr Naresh Bajaj, Associate Professor, Department of Pediatrics, 3Dr Dipankar Pattnaik, Assistant Professor, Department of Microbiology, 4Dr Jyoti Singh, Professor and Head, Department of Pediatrics; all authors are affiliated with Shyam Shah Medical College, Rewa, MP, India

Address of correspondence: Dr. Naresh Bajaj, Associate Professor, Department of Pediatrics, Shyam Shah Medical College, Rewa, MP , India, Email: naresh30405@gmail.com

Abstract

Purpose: To evaluate bacterial and fungal infections, and antibiotic sensitivity in children with severe acute malnutrition. Methods: Design: Cross-sectional study. Setting: Severe Malnutrition Treatment Unit of Pediatric ward of a tertiary level hospital attached to a medical college located in Rewa, Madhya Pradesh, India. Participants: 100 Children with severe acute malnutrition aged 6-59 months. Blood, urine, CSF (cerebrospinal fluid) and pleural fluid samples were cultured and antibiotic sensitivity pattern determined. Results: Blood and urine culture were positive in 28 (28%) and 16 (16%), respectively, CSF and pleural fluid culture were positive in 12.5% (1 out of 8) and 100% (1 out of 1) cases, respectively. Gram-positive bacteria constitute 25 (56.82%) of the total bacterial isolates, where Staphylococcus aureus was most common while Escherichia coli was leading gram-negative bacteria. Blood culture showed 78.57% gram-positive bacteria predominantly coagulase-negative staphylococcus (28.57%), S. aureus (25%) and Enterococcus (25%). Gram-negative blood bacterial isolates constitute equal proportions of E. coli and Klebsiella 10.71% each. Urine bacterial isolates constitute predominantly E. Coli (64.29%) followed by Klebsiella (21.43%). Bacterial isolates showed high level of susceptibility to amikacin (76.19%) followed by tetracycline (57.14%) and gentamcin (44.19%). Low level of susceptibility was observed to ampicillin (11.36%), ciprofloxacin (16.67%) and co-trimoxazole (20.59%). Conclusions: Bacteraemia affected 28% children with severe acute malnutrition predominantly gram-positive isolates. Urine culture was dominated by gram-negative bacteria mostly E. Coli. Most bacterial isolates were resistant to commonly used antibiotics. Current guidelines for antibiotic of choice need to be reviewed.

Keywords: Bacteraemia; Gram-positive; Gram-negative; Antibiotic

Manuscript received: 4th August 2016, Reviewed: 16th August 2016
Author Corrected; 28th August 2016, Accepted for Publication: 15th September 2016

Introduction

Malnutrition in children is a major global public health concern in developing countries around the world, with wide implications. Although preventable child mortality continues to decrease, undernutrition is responsible for 45% of deaths of children younger than 5 years, amounting to more than 3 million deaths each year [1]. The child prevalence of malnutrition in India is twice that of Sub-Saharan Africa and more than one third of the world’s children who are wasted live in India.

Malnourished children have a higher risk of invasive bacterial infections, causing bacterial pneumonia [2], bacterial diarrhoea [3, 4], and bacteraemia [5, 6], with a predominance of gram negative bacteria. Since most infections and deaths in malnourished children occur in low-income settings, the organisms causing disease are rarely identified. Therefore, little is known about whether these differ from pathogens infecting well-nourished children, and whether malnourished children are susceptible to opportunistic infections. Most data on infections in malnourished children come from Africa. There has been very little information on infections in children with Severe Acute Malnutrition (SAM) from India, despite the heavy burden of malnutrition in this region.

Material and Methods

This descriptive cross-sectional study was conducted over a 7-month period from March 2014 to  September 2014 in the Severe Malnutrition Treatment Unit of Pediatric Ward of Gandhi Memorial Hospital, which is a tertiary level hospital attached to a Medical College in Rewa, Madhya Pradesh. This study was initiated after getting approval from the institutional ethics committee. Study population included children with SAM with or without complications, aged 6-59 months admitted during study period. Children who had taken any antibiotics within one week prior to presentation, or those who died before taking necessary investigations were excluded from the study. Informed consent was obtained from all individual participants included in the study. SAM was diagnosed if any 1 of the 3 were present: weight for height/length <-3SD, mid upper arm circumference <11.5 cm or presence of nutritional edema [7]. A standardized clinical form was used to collect sociodemographic information, clinical symptoms and their duration, immunization history, anthropometric measurements, physical signs, results of laboratory investigations, and the patient’s final outcome. Before antibiotic administration blood and urine samples were collected from all patients, and other relevant body fluid samples (cerebrospinal fluid and pleural fluid) when indicated were taken for isolation of bacterial and fungal pathogens.

Blood was obtained for culture by venepuncture after the intact skin was cleansed with 70% ethyl alcohol for a minimum of 30 seconds followed by application of Iodine solution (10% Povidone Iodine) for another 30 seconds in a concentric circle away from the puncture site covering a circular area of 1 to 2 inches in diameter. Two ml of blood from 2 different sites were collected and inoculated into 2 blood culture bottles containing 20 ml of Brain-Heart Infusion (BHI) broth (HiMedia lab. Mumbai, India). Subcultures were performed onto blood agar, chocolate agar, and MacConkey agar plates after 24 hours of incubation at 37oC. Blood cultures were considered positive if a definite pathogen was isolated. The bacterial isolates were identified based on their Gram reaction, colony morphology and biochemical tests. Mixed growths were considered as contaminants or negative. Finally, culture bottles that did not show growth were further incubated for 7 days. If still no turbidity was observed a small portion of the culture broth was inoculated on the media listed above before being reported as negative.

Urine was collected by urethral catheterization or collection of a freshly voided “clean-catch” specimen. Where catheterization was performed, the external genitalia were cleansed. All urine samples were examined microscopically and plated onto blood agar, chocolate agar, and MacConkey agar using a standardized loop. Plates were incubated aerobically at 37oC overnight and examined for growth the following morning. CSF and pleural fluid were collected by lumbar puncture and pleural tap under aseptic conditions. The diagnosis of bacteriuria was based on the finding of any bacterial growth >105 colonies/mL of urine obtained from a freshly voided specimen.

For fungal culture Sabouraud’s Dextrose Agar (HiMedia lab. Mumbai, India) was used. Antibiotic sensitivity patterns of bacterial isolates were determined by Kirby-Bauer disk diffusion method using interpretative criteria described previously.

Results

A total of 192 SAM children were admitted, of which 100 were enrolled in the study. Majority of the patients 94 (94%) were 35 months old or younger. The mean age at enrolment was 13.72 months, 57 (57%) were males (Table 1). Fever was the commonest presenting complaint seen in 88% cases. Children presented with loose stool, rapid breathing and cough/cold in 41%, 40% and 37% cases respectively. Vomiting in 21% and abnormal body movement was presenting complaint in 12% cases. Ten (10%) children presented with edema.

Table-1: Characteristics of 100 children aged 6–59 months with Severe Acute Malnutrition

Characteristic

Participants

Median age

        <12 months

        ≥12 months

13.72

51 (51.00%)

49 (49.00%)

Sex

        Male

        Female

 

57 (57.00%)

43 (43.00%)

Death

6 (6.00%)

Presenting complaints

        Fever

        Cough

        Loose stool

        Vomiting

        Rapid breathing

        Edema

 

88 (88.00%)

37 (37.00%)

41 (41.00%)

30 (30.00%)

40 (40.00%)

10 (10.00%)

Culture positive

        Blood

        Urine

        CSF

        Pleural fluid

 

28 (28.00%)

16 (16.00%)

1/8 (12.50%)

1/1 (100%)

There were 28 positive blood cultures all of which grew bacterial pathogens. Urine samples were positive for bacterial pathogen in 14% cases, and fungal isolate in 2% cases. Both fungus were Candida. CSF and pleural fluid culture were positive for bacterial pathogen in 12.5% (1 out of 8) and 100% (1 out of 1) cases, respectively with no fungal isolate.

Gram-positive bacteria constitute 25 (56.82%) of the total bacterial isolates, where Staphylococcus aureus was most common while Escherichia coli was leading gram-negative bacteria.

Blood culture showed 78.57% gram-positive bacteria predominantly coagulase-negative staphylococcus (28.57%), S. aureus (25%) and Enterococcus (25%). Gram-negative blood bacterial isolates constitute equal proportions of E. coli and Klebsiella 10.71% each. Urine bacterial isolates constitute predominantly E. coli (64.29%) followed by Klebsiella (21.43%). CSF culture showed S. aureus and pleural fluid showed E. coli growth. There was no significant difference in proportions of bacterial isolates by age, sex and presence/absence of edema.

In vitro sensitivity of the blood bacterial isolates (Table 2) showed highest sensitivity to amikacin (85.19%) and least to ampicillin (10.71%) and cefotaxime (16.67%). Similar pattern was also seen in urinary bacterial isolates (Table 3). Overall bacterial isolates (Table 4) by showed high level of susceptibility to amikacin (76.19%) followed by tetracycline (57.14%) and gentamcin (44.19%). Low level of susceptibility was observed to cefotaxime (10.00%), ampicillin (11.36%), ciprofloxacin (16.67%) and co-trimoxazole (20.59%).

Table-2: Antibiotic susceptibility of blood bacterial isolates

Antibiotics

Number of susceptible organism/Number tested (%)

Total

S. aureus

(N=7)

CONS

(N=8)

Enterococcus

(N=7)

E. coli

(N=3)

Klebsiella

(N=3)

Amikacin

7/7 (100%)

7/8 (87.50%)

5/7 (71.43%)

2/3 (66.67%)

2/2(100%)

23/27 (85.19%)

Ampicillin

0/7 (0.00%)

2/8 (25.00%)

1/7 (14.29%)

0/3 (0.00%)

0/3(0.00%)

3/28 (10.71%)

Cefoperazone

NT

NT

NT

1/3 (33.33%)

NT

1/3 (33.33%)

Cefotaxime

NT

NT

NT

1/3 (33.33%)

0/3(0.00%)

1/6 (16.67%)

Cephalexin

1/7 (14.29%)

0/8 (0.00%)

1/4 (25.00%)

0/3 (0.00%)

0/3(0.00%)

2/25 (8.00%)

Ciprofloxacin

0/7 (0.00%)

1/8 (12.50%)

1/6 (16.67%)

2/2 (100%)

0/3(0.00%)

4/26 (15.38%)

Cotrimoxazole

0/7 (0.00%)

0/7 (0.00%)

NT

2/3 (66.67%)

0/3(0.00%)

2/20 (10.00%)

Erythromycin

1/5 (20.00%)

3/8 (37.50%)

2/6 (33.33%)

0/1 (0.00%)

NT

6/20 (30.00%)

Gentamicin

5/7 (71.43%)

4/8 (50.00%)

3/7 (42.86%)

2/3 (66.67%)

2/3(66.67%)

16/28 (57.14%)

Norfloxacin

NT

NT

NT

NT

NT

NT

Tetracycline

3/7 (42.86%)

6/6 (100%)

4/6 (66.67%)

2/3 (66.67%)

2/3(66.67%)

17/25 (68.00%)

Table-3: Antibiotic susceptibility of urinary bacterial isolates

Antibiotics

Susceptibility of urinary bacterial isolates

Amikacin

7/13 (53.85%)

Ampicillin

2/14 (14.29%)

Cefoperazone

1/10 (10.00%)

Cefotaxime

1/13 (7.69%)

Cephalexin

1/12 (8.33%)

Ciprofloxacin

3/14 (21.43%)

Cotrimoxazole

4/13 (30.77%)

Erythromycin

1/2 (50.00%)

Gentamicin

2/13 (15.38%)

Norfloxacin

2/3 (66.67%)

Tetracycline

5/14 (35.71%)

Table-4: Antibiotic susceptibility of all bacterial isolates in relation to the number tested

Antibiotics

Total

Amikacin

32/42

(76.19%)

Ampicillin

5/44

(11.36%)

Cefoperazone

2/14

(14.29%)

Cefotaxime

2/20

(10%)

Cephalexin

4/39

(10.26%)

Ciprofloxacin

7/42

(16.67%)

Cotrimoxazole

7/34

(20.59%)

Erythromycin

8/23

(34.78%)

Gentamicin

19/43

(44.19%)

Norfloxacin

2/3

(66.67%)

Tetracycline

24/42

(57.14%)

Discussion

We have studied bacterial and fungal isolates, and antibiotic sensitivity of bacterial isolates among 100 children aged 6–59 months of age with SAM admitted to Severe Malnutrition Treatment Unit of Pediatric Ward of a tertiary level hospital attached to a medical college located in Rewa. The prevalence of bacteraemia was 28% in children with severe malnutrition in this study is similar to that reported across Sub-Saharan Africa in which the prevalence of bacteraemia ranged from 8.6% to 70% in West Africa [8, 9], 9.2% to 36% in East Africa [10-13], and 7.7% to 13% in South Africa [14, 15]. Causative agents of bacteraemia, however, vary geographically with most studies reporting a predominance of Gram-negative enteric bacteria (GNEB) [10-12, 14] and a few in which Gram-positive aerobes predominated, mostly Staphylococcus species [8-9, 15]. In our study, Gram-positive aerobes accounted for 78.57% of the bacteraemic episodes, with coagulase-negative staphylococcus (28.57%), being the most common isolate immediately followed by S. aureus (25%) and Enterococcus (25%). Studies from several different regions have reported CONS rates in blood cultures ranging from 26.7 to 40% [12, 15-16]. However, CONS are prominent components of the microbial skin flora, and any interruption in the normal skin defence barrier as may occur in severe malnutrition facilitates entry of these organisms into the bloodstream with resultant bacteraemia [15]. Moreover, CONS are well recognized as a significant cause of sepsis among critically ill and immunosuppressed children. There was no significant difference in bactaeremia in children having diarrhea and pneumonia.

The prevalence of bacteriuria of 14% reported in our study is consistent with most other studies in which urine isolation rates varied between 5% and 35% [9, 12, 17-18]. The finding of Escherichia coli (64.29%) and Klebsiella (21.43%) species as the predominant urinary pathogens is also consistent with reports from previous studies where these pathogens accounted for up to 62.5% and 12.5% of urine isolates respectively [18-20].

The current study shows that there has been a change in the blood bacterial isolates susceptibility to antibiotics by showing low susceptibility to commonly used antibiotics. Acquired bacterial resistance to first-line broad-spectrum antibiotics is increasingly common and is a significant cause of mortality [20]. WHO recommends the use of a combination of intravenous ampicillin and once daily intravenous or intramuscular gentamicin. In our study bacterial isolates showed high level of susceptibility to amikacin (76.19%) followed by tetracycline (57.14%). Susceptibility to gentamicin was below 50%. Low level of susceptibility was observed to ampicillin (11.36%), ciprofloxacin (16.67%) and co-trimoxazole (20.59%). Two studies have shown higher mortality in the bacteraemic group compared to non bacteraemic group. However it was not documented if the difference was of statistical significance [10, 14]. The lack of statistical significance in the finding of our study could be a reflection of co-morbidities other than bacteraemia to be the cause of deaths, or could be due to the predominance of less fatal Gram positive microbes.

Study limitations: Our data are limited by being from only one hospital; its finding might reflect selection bias and the results cannot be generalized countrywide. Sample size is small and no controls were taken for comparison. Isolation of anaerobic microbes was not done due to financial constraints.

Conclusions

Our study confirms the high level of infections among children with SAM and that diagnosis based only on clinical signs and isolated tests, is poorly indicative of the type of infection in this population. Our results reinforce current calls to implement robust strategies for limiting the emergence of antibiotic-resistant bacterial strains. Furthermore, expanding both descriptive and interventional studies on the treatment of malnourished populations is essential for addressing the needs of this vulnerable population.

Funding: Nil, Conflict of interest: Nil    
Permission from IRB: Yes

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How to cite this article?

Singh JK, Bajaj N, Pattnaik D, Singh J. Antibiotic susceptibility of bacterial agents in children with SAM: A singlecentre cross-sectional study. Int J Pediatr Res.2016;3(9):672-677.doi:10.17511/ijpr.2016.9.08.